2017-12-21 15:28:592025-05-11 06:17:28
locus
BSU09570
BSU_09570
geneLength
1179
1182
outlinks
bsu
BSU09570
BSU_09570
Gene
Coordinates
1,034,046 → 1,035,227
1,034,046 1,035,227
The protein
Catalyzed reaction/ biological activity
L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate (according to Swiss-Prot)
2-oxoglutarate + L-aspartate --> L-glutamate + oxaloacetate (according to UniProt)
The protein
Protein family
class-I pyridoxal-phosphate-dependent aminotransferase family (according to Swiss-Prot)
[SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
The protein
Paralogous protein(s)
[[protein|AlaT]] (31%)
[[this]]
The protein
Structure
[[protein|3ELE]] (34%)
[PDB|3ELE] (from Eubacterium rectale, 34% identity)
The protein
Additional information
The gene is annotated in KEGG as aspartate aminotransferase EC 2.6.1.1. In MetaCyc the protein is marked as “similar to aspartate aminotransferase”. No EC annotation is available in Swiss-Prot. No literature/experimental evidence supporting the annotation is availablavailable. [Pubmed|19935659]
The gene is annotated in KEGG as aspartate aminotransferase EC 2.6.1.1. In MetaCyc the protein is marked as similar to aspartate aminotransferase. No EC annotation is available in Swiss-Prot. No literature/experimental evidence supporting the annotation is availablavailable. [Pubmed|19935659]
Biological materials
Mutant
MGNA-B485 (yhdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1484 NBRP B. subtilis, Japan]
BKE09570 (Δ[[gene|yhdR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA
BKK09570 (Δ[[gene|yhdR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA
MGNA-B485 (yhdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1484 NBRP B. subtilis, Japan]
BKE09570 ([[gene|yhdR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA
BKK09570 ([[gene|yhdR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA
The protein
[SW|Cofactors]
PLP