SubtiBank SubtiBank
Version comparison:

2017-12-21 15:28:592025-05-11 06:17:28

locus

BSU09570

BSU_09570

geneLength

1179

1182

outlinks

bsu

BSU09570

BSU_09570

Gene

Coordinates

1,034,046 → 1,035,227

1,034,046 1,035,227

The protein

Catalyzed reaction/ biological activity

L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate (according to Swiss-Prot)

2-oxoglutarate + L-aspartate --> L-glutamate + oxaloacetate (according to UniProt)

The protein

Protein family

class-I pyridoxal-phosphate-dependent aminotransferase family (according to Swiss-Prot)

[SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)

The protein

Paralogous protein(s)

[[protein|AlaT]] (31%)

[[this]]

The protein

Structure

[[protein|3ELE]] (34%)

[PDB|3ELE] (from Eubacterium rectale, 34% identity)

The protein

Additional information

The gene is annotated in KEGG as aspartate aminotransferase EC 2.6.1.1. In MetaCyc the protein is marked as “similar to aspartate aminotransferase”. No EC annotation is available in Swiss-Prot. No literature/experimental evidence supporting the annotation is availablavailable. [Pubmed|19935659]

The gene is annotated in KEGG as aspartate aminotransferase EC 2.6.1.1. In MetaCyc the protein is marked as similar to aspartate aminotransferase. No EC annotation is available in Swiss-Prot. No literature/experimental evidence supporting the annotation is availablavailable. [Pubmed|19935659]

Biological materials

Mutant

MGNA-B485 (yhdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1484 NBRP B. subtilis, Japan]

BKE09570 (Δ[[gene|yhdR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA

BKK09570 (Δ[[gene|yhdR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA

MGNA-B485 (yhdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1484 NBRP B. subtilis, Japan]

BKE09570 ([[gene|yhdR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA

BKK09570 ([[gene|yhdR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA

The protein

[SW|Cofactors]

PLP